1,285
  • Crystallography Play all

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  • Electron Microscopy Play all

    • RELION 3.0 - Duration: 54 minutes.

      • 1 week ago
      • 161 views
      Topic : RELION-3: new tools for automated high-resolution cryo-EM structure determination
      Presenter: Sjors Scheres, Group Leader, MRC Laboratory of Molecular Biology, UK

      Host: Jason Key / Shaun ...
    • Scipion - Duration: 38 minutes.

      • 4 months ago
      • 181 views
      Topic: Using Scipion for Stream Image Processing at Cryo-EM Facilities
      Presenter: José Miguel de la Rosa Trevin, PhD, Scientific Software Engineer, SciLifeLab, Stockholm University, Sweden

      Host: J...
    • EMAN2.2 - Duration: 53 minutes.

      • 11 months ago
      • 394 views
      Topic: EMAN2.2 for Single Particle Analysis and In-situ Structural Biology
      Presenter: Steven Ludtke, Ph.D.
      Professor of Biochemistry - Baylor College of Medicine
      Co-Director - National Center for ...
    • SPHIRE - Duration: 26 minutes.

      • 1 year ago
      • 331 views
      Topic: SPHIRE: User-friendly pipeline for near-atomic resolution Cryo-EM structure determination with automatic validation mechanisms.
      Speaker: Toshio Moriya, Ph.D. Postdoctoral Fellow, Max Planck ...
    • ChimeraX - Duration: 49 minutes.

      • 1 year ago
      • 1,939 views
      Topic: Movie Making for cryoEM using ChimeraX
      Presenter: Tom Goddard, Programmer/Analyst, UCSF Resource for Biocomputing, Visualization, and Informatics

      Hosted by Pete Meyer
      Recorded on April 11,...
    • SITUS - Duration: 38 minutes.

      • 2 years ago
      • 636 views
      Topic: Combining Structures from Different Biophysical Origins with Situs
      Presenter: Willy Wriggers, Director, biomachina.org, Professor, Mechanical & Aerospace Engineering, Old Dominion Univers...
    • RELION - Duration: 51 minutes.

      • 3 years ago
      • 5,288 views
      Topic: RELION
      Presenter: Sjors Scheres, Group Leader
      Medical Research Council, The Laboratory of Molecular Biology

      Host: Jason Key
      Recorded on March 24, 2015
    • EMAN2.1 - Duration: 59 minutes.

      • 3 years ago
      • 1,234 views
      Topic: A quick introduction to EMAN2.1 for CryoEM Single Particle Analysis
      Presenter: Steven Ludtke, Ph.D., Professor, Baylor College of Medicine

      Host: Jason Key
      Recorded on April 15, 2015
    • Single Particle EM Computational Challenges - Duration: 1 hour, 8 minutes.

      • 3 years ago
      • 881 views
      Topic: Protein Structure Determination with Single Particle Electron Microscopy - Computational Challenges
      Presenter: Pawel Penczek, Ph.D., Professor and Director, Structural Biology Imaging Cent...
    • Gorgon - Duration: 36 minutes.

      • 4 years ago
      • 226 views
      Topic: Modeling Macromolecular Structures with Gorgon
      Presenter: Matt Baker, Ph.D., Instructor, Department of Biochemistry and Molecular Biology, Baylor College of Medicine

      Host: Jason Key
      Reco...
    • PARTICLE - Duration: 40 minutes.

      • 5 years ago
      • 377 views
      Topic: PARTICLE: an Integrated Computing Platform for Single-Particle Electron Microscopy
      Presenter: James Chen, Ph.D., Research Scientist, Dept of Biology, MIT

      Host: Piotr Sliz
      Recorded on Oc...
    • An Introduction to Appion - Duration: 6 minutes, 49 seconds.

      • 9 years ago
      • 1,339 views
      This is a brief overview of the Appion single particle processing pipeline. Download from www.appion.org
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  • Structure Analysis and Visualization Play all

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  • Computational Chemistry Play all

    • PLUMED - Duration: 42 minutes.

      • 5 months ago
      • 260 views
      Topic: Analyzing and enhancing molecular dynamics simulations with PLUMED
      Presenters: Giovanni Bussi -- Associate Professor, SISSA, Trieste, Italy
      Massimiliano Bonomi -- Postdoc, University of Cam...
    • Dock - Duration: 44 minutes.

      • 1 year ago
      • 369 views
      Topic: DOCK: Where it is and where its going
      Presenter: Trent Balius, Ph.D. , Postdoctoral Scholar, Shoichet Lab, University of California, San Francisco

      Recorded on June 20, 2017
      Host: Jason Key
    • HADDOCK - Duration: 48 minutes.

      • 3 years ago
      • 2,246 views
      Topic: Modelling biomolecular complexes using HADDOCK: local vs server mode.
      Presenter: Alexandre Bonvin, Computational Structural Biology group, Bijvoet Center for Biomolecular Research, Universi...
    • ProDy - Duration: 55 minutes.

      • 2 years ago
      • 332 views
      Topic: Elastic Network Models and ProDy for Bimolecular Systems Dynamics
      Presenter: Ivet Bahar, University of Pittsburgh

      Host: Jason Key
      Recorded on June 26, 2016
    • GROMACS - Duration: 57 minutes.

      • 3 years ago
      • 8,772 views
      Topic: Molecular Simulations with GROMACS: Possibilities and Pitfalls
      Presenter: Erik Lindahl, Professor, Stockholm University and KTH Royal Institute of Technology

      Host: Jason Key
      Recorded on Ma...
    • Virtual Screening with Schrödinger - Duration: 15 minutes.

      • 5 years ago
      • 4,834 views
      Topic: An Introduction to Virtual Screening with Schrödinger 2012-2 on SBGrid Computing Clusters"
      Presenter: Jason Key, PhD. Structural Biology Computing Scientist, SBGrid, Harvard Medical School,...
    • Schrödinger - Duration: 52 minutes.

      • 5 years ago
      • 485 views
      Topic: Recent Enhancements and Scientific Advancements in the Schrödinger Suite
      Presenter: Woody Sherman, Schrödinger Vice President of Applications Science.

      Host: Piotr Sliz
      Recorded on June 1...
    • Schrodinger Glide with ICCB Library - Duration: 16 minutes.

      • 5 years ago
      • 286 views
      Topic: A basic primer for docking and similarity searching against the ICCB-Longwood databases on the SBGrid Goldfinger cluster
      Presenter: Paul Sanschagrin

      SBGrid Host: Jason Key
      Recorded on Mar...
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  • NMR Play all

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  • Other Tools Play all

    • SBGrid Capsules - Duration: 29 minutes.

      • 1 year ago
      • 140 views
      What's new at SBGrid: SBGrid Capsules
      Presenter: Carol Here, SBGrid, Harvard Medical School

      Host: Jason Key
      Recorded on September 19, 2017
    • BioXTAS RAW - Duration: 37 minutes.

      • 1 year ago
      • 311 views
      Topic: Analyzing Biological Small Angle X-ray Scattering Data Using RAW
      Presenter: Jesse Hopkins, Ph.D., Postdoctoral Research, Cornell University

      For more information on RAW: https://sourceforge....
    • Geneious - Duration: 1 hour, 2 minutes.

      • 2 years ago
      • 3,264 views
      Topic: Geneious (Custom BLAST, workflow builder, annotation tools, CRISPER tools)
      Presenter: Christian Olsen, Field Application Scientist at
      Biomatters, Inc

      Host: Jason Key
      Recorded on July 26...
    • SPI at XFELs - Duration: 30 minutes.

      • 2 years ago
      • 99 views
      Topic: SPI at XFEL's and the birth of SFX
      Presenter: Filipe R N C Maia, Laboratory of Molecular Biophysics, Uppsala University

      Host: Piotr Sliz
      Recorded on November 30, 2015
    • SAXS Part II: Advanced Applications of Biological Small Angle Scattering - Duration: 51 minutes.

      • 3 years ago
      • 4,793 views
      Topic: Advanced Applications of Biological Small Angle Scattering
      Presenter: Thomas Grant, Staff Scientist , BioXFEL Science and Technology Center, Hauptman-Woodward Medical Research Institute

      H...
    • Getting Started with SBGrid - Duration: 26 minutes.

      • 4 years ago
      • 340 views
      Topic: Getting Started with SBGrid
      Presenter: Jason Key, SBGrid Consortium, Harvard Medical School

      Recorded on October 29, 2014
    • Geneious R7 (part II) - Duration: 56 minutes.

      • 4 years ago
      • 2,655 views
      Topic: Geneious R7: Molecular Cloning Tools for Biologists
      Presenter: Christian Olsen, Biomatters, Inc.

      Host: Jason Key
      Recorded on September 30, 2014
    • Geneious R7 - Duration: 55 minutes.

      • 4 years ago
      • 8,472 views
      Topic: Geneious R7: Sequence Analysis Tool for Biologists
      Presenter: Christian Olsen, Biomatters, Inc.

      Host: Jason Key
      Recorded on Sept 9th, 2014
    • MAFFT/MAFFTash: Web services for structure-informed multiple sequence alignment - Duration: 21 minutes.

      • 4 years ago
      • 1,884 views
      Topic: MAFFT/MAFFTash: Web services for structure-informed multiple sequence alignment
      Presenters: Kazutaka Katoh and Daron Standley, Immunology Frontier Research Center, Osaka University

      Host...
    • Molecular Biology with Geneious R7 - Duration: 25 minutes.

      • 5 years ago
      • 5,034 views
      Topic: Geneious R7: A bioinformatics platform for biologists
      Presenter: Christian Olsen, Field Application Scientist, Biomatters, Inc.

      SBGrid Host: Paul Sanschagrin
      Recorded on Oct 3, 2013

      Genei...
    • SAXS Part I: Introduction to Biological Small Angle Scattering - Duration: 49 minutes.

      • 4 years ago
      • 46,257 views
      Topic: SAXS Part I: Introduction to Biological Small Angle Scattering
      Presenter: Thomas Grant, Postdoctoral Scholar from the Hauptman-Woodward Medical Research Institute

      Host: Jason Key
      Recorded o...
    • Protein Information Management System (PiMS) - Duration: 30 minutes.

      • 5 years ago
      • 161 views
      Topic: What can a LIMS do for protein scientists?
      Presenter: Chris Morris.Project Manager, PiMS, Science & Technology Facilities Council, UK,

      Host: Piotr Sliz
      Recorded on December 20, 2012
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  • SBGrid/NE-CAT 2014: Data Processing in Crystallography Play all

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  • Crystallography Techniques Play all

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