MultiAssayExperiment demo

A demo of the MultiAssayExperiment Bioconductor package for the integration of multi-omics experiments.

Table of Contents:

00:00 - MultiAssayExperimentSoftware for the integration of multi-omics experiments in Bioconductor
00:19 - loading and looking at the miniACC dataset
01:55 - the colData and `$` for accessing patient data
02:38 - experiments() and sampleMap() components
03:44 - subsetting by genes, genomic ranges, patients, and assays
04:15 - intersectColumns() and intersectRows()
04:42 - assays() for extracting a list of numeric matrices
04:57 - longFormat() for performing integration of assays and patient data
05:43 - wideFormat() for performing integration of assays and patient data
06:02 - a example of performing multi-omics survival analysis
06:58 - conclusions

• Category

  • Howto & Style

• License

  • Standard YouTube License