 I think it's I think I waited enough so I think we can start so hello everyone makes him here like can you hear me here in the room oh no yes you can hear me in the room okay that's good sorry so hello everyone makes him here from the London hub and we are starting our daily thing so first of all I would like like to thank like everyone around for like helping us have like this amazing hackathon like I've been like following like Slack and the number of messages used the number of issues is like created fixed like PR and stuff has been like amazing like my inbox is like is a mess I haven't like managed like to look properly at it so thank you every much for that and I think I think who is I think like fun is starting first for the daily thing on the documentation so fun I leave it to you thank you so I didn't manage to get the slides really ready in time so we'll have to deal with what I have um let me find the first that I don't share the right the wrong thing where I I cannot find it okay let's share the desktop beautiful um so um our team did grow quite a bit can you see my desktop by the way no we can see like your Gazaton why ah because it's the wrong desktop my god this is not going well um can I change which desktop I'm sharing you know what maybe someone else can do first yes I think that's a good idea uh Mattias do you want to take over for now thank you so much okay hello there um just a quick here from the infrastructure team um so yes you can hear me and now I'll share the screen so you can see that good okay so they too again infrastructure team website and the tool stuff uh from the website Sophia is looking into the parameters where the sometimes the problem with long heading uh long parameter names that the link to them is far away so she will hopefully fix that for us uh Arthur is looking into adding the functionality to undo patches basically um and also added a lint test to avoid having a system exit commands in our code um actually Maxime uh added something for the infrastructure he grouped all most musculos uh data test data sets uh and uh Adrian is the working on the tests or uh and of course I will close great test jumble command uh Novak won the quiz so sorry for not knowing how to pronounce the name before very nice that again and and of course infrastructure person wins the quiz I see a pattern um and he also worked on typing our and of course tools commands he has an pr there which we are slowly getting where we want it one test of the number Karthik is working on the NF course chemo build where we want to have uh null instead of none and it's a bit of tricky thing but he'll manage it I'm sure Edmunds uh is working on replacing the request uh mocks with actually responses uh and Fabian it's cut off here but as I remember correctly he's working on making the pie tests faster with fixtures and then I need to look in my side here is Anna Marie added lint tests for finding deprecated uh enable conda parameter and uh me and Julia uh looked into the git.dev container in the tools dev branch so that the branch corresponds to the container and we always have the RMS up to date one I guess that is it from the infrastructure team from day two see you at day three okay thank you very much Mattias uh when are you okay to pick up or shall I pick up with the module and the thingy I can at least try so I'm working with split screen and stuff so it's getting confusing but let's try this what happens this time if I share my desktop see my desktop it's not slides but um it'll have to do so our team did grow quite a bit uh over the night mainly um so a lot of people working on um the let's say easier bits of documentation as like doing work on the bite size talks and so on so that was very nice to see um there was I am sure a lot and well we can see actually there's a lot of done things in day two um let's start at the bottom it's the other way around as I'm used to it but yeah we have flagged 23 issues as done so I I'm a bit late because I tried to actually put them all up and it I just didn't manage in time so that's why it's all a bit um a haze at the moment um there's also still quite a few in progress that are ready to be reviewed so in total we have 10 issues they're pretty much done someone has to look through them and uh there's also still ongoing things I have to say that today there was not a lot of questions so most people knew what they were doing that also means that I don't exactly know what everyone has been doing um but uh it's nice to see that everyone is so self-sufficient in documentation so thank you very much for the great work thank you very much fun for that uh so now I think I think it's me like now to take over so let me share my screen uh let's share my desktop okay uh module team so we are a bit like this time like we were a bit more organized so still a lot of like uh open like uh issue and PR to add like new modules so I will not list them because I have no idea what happened there and no idea what the module are for because we're getting like super like we're spreading like a lot on the NFCOR and I think that's what is great about this community so I'm very happy to discover like all of this new module and that's like that's great uh we have like some module updates because unfortunately there was like some uh like stuff to update so I think that's always good like to be able to update module and stuff uh and then yesterday I briefly mentioned like the MC micro team like they're working on this multiplex like tissue imaging test technique so they've been working on at every possible level like to have that like possible and uh basically they're creating like the test that I said that they need for that they're creating the module they're creating like everything so we listed like all of that there so they made like some new call requests today they're creating like some more issues and organizing themselves like quite a lot and I think it's great like to have like a new community like joining in and like uh doing like more stuff here I know that uh in the pipeline team there is also like some new people coming in so I'm really like happy about that and looking forward to to more of that but I think we might be like talking about that later uh and I think yes that's all for the second day so like you did very good team I'm uh said that I didn't manage like to do much today I think my only PR was on the infrastructure like uh part but I did count it as the module that way I'm done like for two PR it's the same but twice it's fine uh then for the sub-workflow we merged like two PR apparently from the from the daily uh like from what I can see on the akimli uh finally the UMI sub-workflow update has been merged so thanks a lot Francesco and Adam for that one and we updated the index handling in some BAM sub-workflow like so thanks a lot Nicholas for that so thank you for that and Rike I think now it's your turn with the pipeline hi uh today I will do the summary um let me share the screen so sorry that's Susan that's not Rike yes that's me yeah yeah my name is Susan uh so in the pipeline team there were like 16 pipelines that have been worked on today uh two of them are working on BSL2 conversion there are six new pipeline proposals and eight pipelines which are just fixing issues um for instance eager is being currently like converted to DSL2 and you can see the ones that have green ticks are already merged those PRs and there's a long list of PRs so I will not go through all of them but yeah you can have a look at that maybe later if you like um yeah there's also the dual RNAC pipeline that does a lot of work and they have some more PRs merged um then the pan genome pipeline by Zemon from Cubake has also some PRs merged and viral integration is also a new pipeline so those are new pipelines actually pan genome viral integration um then the variant catalog from Canada magmap they have actually only merged PR so I guess they had a great day today then the some semi-seq pipeline um there's just one person working on that but currently something was merged ah sorry and then the spinning Jenny which is a cool name I think also doing some progress and then pipelines that are fixing issues are Zarek um down here actually I'm having a travel with a bioconda recipe so if somebody could help me there maybe have a look that's the PR 702 and yeah then tax profiler is also doing a lot of work here nano-seq so you can see there's a lot of work going on in the pipeline development and yeah differential abundance as well um yeah it's just a very very long I guess adding some new functionalities and protein fold func scan also ampli-seq and bam to first you and yep that's basically it so thanks for all the great work today and yeah let's hope we continue like this tomorrow and merge some more PRs no that's amazing work like uh thank you very much Susan for the for the sync and uh yes so now I think like Mattias oh that's weird to see like too many of you at the same time so Mattias is going to do like a presentation about like the scavenger hunt and I think like in 45 minutes Arshil is going to do like a tower demo so if you're interested in that like remember to join us like in the in the amphitheater uh Mattias your turn okay sorry for that okay now it should work um yes so you might have seen that we have a scavenger hunt going which is basically just like small challenges um to mostly take pictures of certain things we ask you about and this is just a wrap up for the challenges we posted today so not the first day but uh what's happened on day two if you want to see the challenges it's in the scavenger uh slack channel first one today was take a picture of someone looking tired which was not the difficult today would be even easier tomorrow they have a very nice uh hackathon member here trying to enjoy a bit of uh curtain yeah carpet sorry uh the next challenge was uh take a picture of success oops okay yes which is also part of a hackathon it's not just the failures we have problems but also the success which very mixed picture here we have a new model which was merged um we have a successful run of a pipeline run and we have a repository which has been archived so all the different kinds of saying goodbye and saying hello you have while working on code um next issue was that since that yeah and of course is based on an apple core we asked you to make picture of apple core and we got two very nice uh examples here so just a reminder the core from enough core comes from an apple core uh and the core facility but yeah um same same the next question uh the challenge was take a picture of a person or people playing air guitar and actually to begin represent it here uh very nice morning we had chanting on the bridge i don't know if you got money for this this is a process by job disappoints um next was a bit like a selfish thing maybe we will get a new end of core logos or we asked people around with what they think an end of core logo could be uh we got two i i guess computer uh or like machine learning based um images because this is similar i tried also to get different kind of and of course stuff out of um different um thanks to image generators and they're not that good actually with apples and cores and green and yeah too too much information then we have three very different kinds of um of ways how to interpret the old logo but also like the name uh and then uh one like textile art piece and even land art so all different uh arts disciplines are collected here very nicely thank you very much for all the hard work sometimes it looks like going out in the snow tramping around yes uh then the last uh one i picked up for today is take a picture of the realistic gather avatar and we got this from belgrade and it's like one to one it's it's very well uh good attention just one thing i would like to see the purple pants please so if you could also post a picture of purple pants then i would be very satisfied but overall i i need to actually shout out belgrade because like you post these very nice pictures a lot of them come from from belgrade and also the first two places on the quiz just before comes from belgrade so well done belgrade it looks like you have a lot of fun there uh with that yes check out the channel uh do more uh challenges or take part in more challenges and yeah maybe your picture will be here tomorrow goodbye from my side and back to maxine hello hello good uh hello again sorry uh so thanks again like for for attending there uh that was like nice like i'm super happy to see like so many people like taking part of this scavenger hunt i i was sad to see like my pictures were not selected but i'm i will do better and i will see like a picture of me like tomorrow i'm really hoping for that uh so yes thank you very much like for the day uh don't hesitate like to take some break like i can't stress it not like it's important like take care of you uh i personally like do go for a walk like pretty often here in google i'm trying to steal a banana but it's a bit big i'm pretty sure like they will notice here so it's sad so thank you very much uh take care and see you soon goodbye