NGS pipelines in UGENE

UniproUGENE
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Published on Mar 24, 2014

A brief overview of NGS pipelines in UGENE: "Variant Calling with SAMtools", "RNA-seq Analysis with Tuxedo", and "ChIP-seq Analysis with Cistrome".

An infrastructure that helps a user to configure the pipelines and investigate the results is also breifly shown: wizards, dashboards, etc.

UGENE can be downloaded at http://ugene.unipro.ru/download.html

You should download the NGS package to have the pipelines to be configured out-of-the-box.

Pipelines availability on different OS:
- Windows: SAMtools, Cistrome
- Mac OS X: SAMtools, Tuxedo, Cistrome
- Linux: SAMtools, Tuxedo, Cistrome

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