q2d2: A public QIIME 2 prototype





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Published on Jan 7, 2016

This video is a demo of Q2D2, a public QIIME 2 prototype. This video will give users an idea of the direction we're going with the API and Jupyter (i.e., IPython Notebook) based interface for QIIME 2. A rough table of contents follows:

0:00 - Introduction to Q2D2
1:40 - Installing (so you can test the prototype yourself)
3:10 - Launching Q2D2
3:45 - Uploading files for analysis
5:05 - Rarefaction workflow, with interactive histograms
7:15 - Alpha diversity workflow, with integrated metadata-based filtering and metric comparison
9:50 - Beta-diversity workflow, with integrated metadata-based filtering
12:25 - Taxonomy plotting workflow, with integrated sample binning and metadata-based filtering
13:20 - Behind the scenes: notebooks are actually markdown files
15:45 - Users can easily edit workflows
17:25 - Wrapping up

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