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Published on Nov 4, 2014
http://www.transplantdb.eu Part 1 (0:49): Find barley genome resources Part 2 (1:48): Sequence search using BLAST Part 3 (3:39): Retrieve details about barley gene models Part 4 (9:34): Investigate syntenic relationships with grass reference species such as Brachypodium and rice. Part 5 (14:30): Retrieve and investigate gene expression data/profile for a selected barley gene Part 6 (17:12): Explore barley variation data for a selected gene model. Part 7 (21:21): Identify putative gene locations on the barley genome. Part 8 (24:11): Download bulk flat files for barley genome data.
Learn how to mine, integrate and interpret heterogeneous barley genome data from various transPLANT resources and databases. Starting with an unknown transcript sequence from barley you will learn in this transPLANT video tutorial: - find out as many as possible about this sequence: identify putative gene model (function, expression, orthologs, ...) - learn about the use and navigation in transPLANT genome resources and databases - identify a putative position of a barley gene on the chromosome - explore synteny (conserved gene order) with other (reference) grass species - find out about variation data in barley - learn where to download batch data for in-depth analyses