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Patternlab for Proteomics 4.0

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Published on Jul 4, 2015

PatternLab for proteomics is an integrated computational environment for analyzing shotgun proteomic data. PatternLab contains modules for formatting sequence databases, performing peptide spectrum matching, statistically filtering and organizing shotgun proteomic data, extracting quantitative information from label-free and chemically labeled data, performing statistics for differential proteomics, displaying results in a variety of graphical formats, performing similarity-driven studies with de novo sequencing data, analyzing time-course experiments, and helping with the understanding of the biological significance of data in the light of the Gene Ontology.
Download at http://patternlabforproteomics.org/

How PatternLab for proteomics works:
Step 1: Installing PatternLab 0:21
Step 2: Download database at UniProt 0:44
Step 3: Generating a target decoys sequence database 1:05
Step 4: Identifying mass spectra 1:25
Step 5: Filtering results 1:58
Step 6: Project Organization 3:39
Step 6a: Quantitation by Spectrum Counting 4:17
Step 6b: Quantitation by XIC 4:40 Isobaric Analyzer 5:46
Step 7: Statistical Analyzes 6:44
Step 8: Analyze 7:47
Step 8a: Buzios 7:50
Step 8b: TrendQuest 8:07
Step 8c: Venn Diagram 8:37
Step 8d: Gene Ontology Explorer 9:16

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