TCBG UIUC

VMD Image making tutorial

12,142 views 2 years ago

This online tutorial shows some of the techniques to create beautiful scientific figures using VMD 1.9.2
To download VMD 1.9.2 - http://www.ks.uiuc.edu/Deve...... Show less
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Uploads Play all

Accurate Calculation of Protein Ligand Binding Energies - Chris Chipot - Duration: 1 hour, 40 minutes.

40 views
1 month ago

Introduction to Classical Force Fields: Topology, Parameters, and Structure Files - Emad Tajkhorshid - Duration: 1 hour, 56 minutes.

18 views
1 month ago

Introduction to Force Field Toolkit - Christopher Mayne - Duration: 43 minutes.

21 views
1 month ago

Introduction to Modeling and Simulation of DNA Systems - Alek Aksimentiev - Duration: 1 hour, 20 minutes.

11 views
1 month ago

Introduction to Molecular Dynamics Flexible Fitting - Ryan McGreevy - Duration: 30 minutes.

11 views
1 month ago

Introduction to Simulations of Bacterial Cells - Zan Luthey-Schulten - Duration: 1 hour, 11 minutes.

8 views
1 month ago

Introduction to QwikMD and Amazon Cloud - João Ribeiro - Duration: 45 minutes.

39 views
1 month ago

Visualizing Biomolecules in VMD - John Stone - Duration: 1 hour, 42 minutes.

23 views
1 month ago

A General Overview of Free Energy Methods - Chris Chipot - Duration: 1 hour, 30 minutes.

22 views
1 month ago

Introduction to Molecular Dynamics with NAMD - Emad Tajkhorshid - Duration: 2 hours, 17 minutes.

27 views
1 month ago

stalk rotation of V-type ATPase - Duration: 71 seconds.

47 views
1 month ago

Rotatory catalysis in V-type ATPase - Duration: 36 seconds.

47 views
1 month ago

View all
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Popular uploads Play all

Water Channels in Cell Membranes - Duration: 48 seconds.

16,316 views
5 years ago

Six Microseconds of Protein Folding - Duration: 45 seconds.

13,077 views
5 years ago

VMD Image making tutorial - Duration: 5 minutes, 31 seconds.

12,142 views
2 years ago

CC

Alpha-Hemolysin: A Protein That Kills - Duration: 29 seconds.

8,865 views
9 years ago

First Spontaneous Ligand Binding Simulated - Duration: 88 seconds.

7,942 views
9 years ago

Ribosome-Translocon-Membrane Complex - Duration: 35 seconds.

5,817 views
6 years ago

Light Harvesting by Chlorophyll - Duration: 20 seconds.

5,220 views
6 years ago

Electrical Current through a Bacterial Toxin - Duration: 35 seconds.

4,121 views
9 years ago

Energy Conversion Processes in a Light Harvesting Organelle at Atomic Detail - Duration: 8 minutes, 44 seconds.

3,956 views
2 years ago

Energy Conversion Processes in a Light Harvesting Organelle at Atomic Detail - Brief - Duration: 4 minutes, 48 seconds.

3,828 views
2 years ago

Translocation of a Polypeptide Helix through SecY - Duration: 44 seconds.

3,366 views
9 years ago

Example VMD VR movie: chromatophore with lipids - Duration: 2 minutes, 12 seconds.

3,246 views
1 year ago

View 30+ more
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Movies made by (non-TCBG) VMD and NAMD Users Play all

Videos found on YouTube which indicate use of VMD and/or NAMD in making the video content.

Superoxide Dismutase Partially unfolding - Duration: 67 seconds.

shadowboy813

7,276 views
8 years ago

Melting of Fullerene at 6000K - Duration: 17 seconds.

ayaori

1,500 views
10 years ago

vinrar - Duration: 9 seconds.

wolfgangouille

1,053 views
8 years ago

Fullerene C60 pulled at Constant Velocity - Duration: 7 seconds.

ayaori

1,911 views
10 years ago

1PRM - Duration: 14 seconds.

wolfgangouille

618 views
7 years ago

Fullerene Toy Model fragments at 5000K - Duration: 14 seconds.

ayaori

605 views
10 years ago

Minimisation of a Fullerene Toy Model - Duration: 16 seconds.

ayaori

648 views
10 years ago

Fullerene breaks bonds at 1000K - Duration: 17 seconds.

ayaori

583 views
10 years ago

Fragmentation of a Fullerene Toy Model - Duration: 16 seconds.

ayaori

377 views
10 years ago

VMD with Gromacs protein simulation over IMD - Duration: 25 seconds.

sn3akz

8,427 views
7 years ago

Interactive MD with LAMMPS and VMD - Duration: 61 seconds.

Axel Kohlmeyer

10,828 views
7 years ago

How to make HD movies using VMD - Duration: 104 seconds.

icelcn

10,681 views
7 years ago

View 30+ more
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VMD Image making tutorial

Uploads Play all

Accurate Calculation of Protein Ligand Binding Energies - Chris Chipot - Duration: 1 hour, 40 minutes.

Introduction to Classical Force Fields: Topology, Parameters, and Structure Files - Emad Tajkhorshid - Duration: 1 hour, 56 minutes.

Introduction to Force Field Toolkit - Christopher Mayne - Duration: 43 minutes.

Introduction to Modeling and Simulation of DNA Systems - Alek Aksimentiev - Duration: 1 hour, 20 minutes.

Introduction to Molecular Dynamics Flexible Fitting - Ryan McGreevy - Duration: 30 minutes.

Introduction to Simulations of Bacterial Cells - Zan Luthey-Schulten - Duration: 1 hour, 11 minutes.

Introduction to QwikMD and Amazon Cloud - João Ribeiro - Duration: 45 minutes.

Visualizing Biomolecules in VMD - John Stone - Duration: 1 hour, 42 minutes.

A General Overview of Free Energy Methods - Chris Chipot - Duration: 1 hour, 30 minutes.

Introduction to Molecular Dynamics with NAMD - Emad Tajkhorshid - Duration: 2 hours, 17 minutes.

stalk rotation of V-type ATPase - Duration: 71 seconds.

Rotatory catalysis in V-type ATPase - Duration: 36 seconds.

View all

Popular uploads Play all

Water Channels in Cell Membranes - Duration: 48 seconds.

Six Microseconds of Protein Folding - Duration: 45 seconds.

VMD Image making tutorial - Duration: 5 minutes, 31 seconds.

Alpha-Hemolysin: A Protein That Kills - Duration: 29 seconds.

First Spontaneous Ligand Binding Simulated - Duration: 88 seconds.

Ribosome-Translocon-Membrane Complex - Duration: 35 seconds.

Light Harvesting by Chlorophyll - Duration: 20 seconds.

Electrical Current through a Bacterial Toxin - Duration: 35 seconds.

Energy Conversion Processes in a Light Harvesting Organelle at Atomic Detail - Duration: 8 minutes, 44 seconds.

Energy Conversion Processes in a Light Harvesting Organelle at Atomic Detail - Brief - Duration: 4 minutes, 48 seconds.

Translocation of a Polypeptide Helix through SecY - Duration: 44 seconds.

Example VMD VR movie: chromatophore with lipids - Duration: 2 minutes, 12 seconds.

View 30+ more

Movies made by (non-TCBG) VMD and NAMD Users Play all

Superoxide Dismutase Partially unfolding - Duration: 67 seconds.

Melting of Fullerene at 6000K - Duration: 17 seconds.

vinrar - Duration: 9 seconds.

Fullerene C60 pulled at Constant Velocity - Duration: 7 seconds.

1PRM - Duration: 14 seconds.

Fullerene Toy Model fragments at 5000K - Duration: 14 seconds.

Minimisation of a Fullerene Toy Model - Duration: 16 seconds.

Fullerene breaks bonds at 1000K - Duration: 17 seconds.

Fragmentation of a Fullerene Toy Model - Duration: 16 seconds.

VMD with Gromacs protein simulation over IMD - Duration: 25 seconds.

Interactive MD with LAMMPS and VMD - Duration: 61 seconds.

How to make HD movies using VMD - Duration: 104 seconds.

View 30+ more

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