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MD simulation reproduces crystallographic trypsin-benzamidine complex by free ligand binding

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Uploaded by on Feb 22, 2011

We performed hundres of MD simulations of free benzamidine binding to trypsin. We have captured several events of binding reproducing the crystallographic mode (PDB 3PTB). Moreover, we have found the prefered pathway for binding for benzamidine.
Solvent not shown for simplicity.

Simulations performed on GPUGRID.net

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