Protein Folding

A simulation of protein folding in the HP lattice model from a random state to ground state with maximum number of HH contacts. The red balls are Hydrophobic amino acids.
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Category:

People & Blogs

Tags:

• protein
• folding
• molecule
• simulation
• bioinformatics
• biochemistry
• computer
• science
• amino
• acids

[leavetrace]

@cmvb

thank you for answer

are you try to solve the same problem ?which algorithm you used?

now i try to use Jmol to view my solution

are you work with any group ?i try a lot to found any group work on the same point of research?

[cmvb]

@leavetrace try to use the C language...java is too slow. it's only a suggestion hehe

I use the Rasmol SW with adapted files (with the coordinates).

I worked with a 3D model with side-chains.

[leavetrace]

i use immune system and genetic algorithm to solve this problem i code the algorithm by java ; i want ask which tool you use to visualize the output solution you get from your algorithm ;

thank you for help on advance.

[leavetrace]

how can i share in the group ? to learn more;thank you

[mlcarrol]

Nice simple representation of protein folding driven by entropy (we must assume the protein is in an aqueous solution).