org-protocol intercepts calls from emacsclient to trigger custom actions inside a running emacs.
org-protocol comes with three predefined handlers described in depth on http://orgmode.org/worg/org-contrib/org-protocol.php:
* `store-link' - store an URL for yanking either as plain URL (kill-ring) or as org-link.
* `remember' - fill a remember templates with external data.
* `open-source' - open the sources of published content in emacs.
For detailed information see http://orgmode.org/worg/org-tutorials/org-protocol-custom-handler.php
Org-mode is described on http://orgmode.org, the manual is found on http://orgmode.org/manual/
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