Simulation of the IF1 in showing its molecular surface and the water molecules. The surface is colored by secondary structure as determined by the STRIDE implementation in VMD. Notice the protein diffussion during the simulation as well as avery brief bend of the helix.
For more details see:
Dominguez-Ramirez L, Gomez-Puyou A, de Gomez-Puyou MT. A hinge of the endogeneous ATP synthase inhibitor protein: the link between inhibitory and anchoring domains. Proteins. 2006 Dec 1;65(4):999-1007.
Great job. Mine are a way simpler =/ What are your skills?
wolfgangouille 3 years ago
Please post some basic data about the simulation. What are we supposed to see? :)
pirejknf 3 years ago
It's hard to appreciate entropy as a force until you watch an MD video.
KaoriBlue 3 years ago