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BroadE: Genotype refinement & functional annotation

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Published on Sep 30, 2013

Copyright Broad Institute, 2013. All rights reserved.

The presentations below were filmed during the 2013 GATK Workshop, part of the BroadE Workshop series. The GATK Workshop covered the core steps involved in calling variants with the Broad's Genome Analysis Toolkit (GATK), using the "Best Practices" developed by the GATK team.

Workshop topics included the importance of each step to the calling process, the key operations performed on the data at each step, and how to use the GATK tools to get the most accurate and reliable results out of a dataset.

At the time of this workshop, the current version of GATK was version 2.6.

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