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Import SRA of ChIP-seq data through DRA & Galaxy
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264 views
The NGS generates huge data and you need a high spec computera with a very large storage and RAM. But, of course, only limited biologists are taking such an advantage. Rece...
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Import NimbleGen DNA Methylation data.mp4
subiosupport
80 views
A tutorial movie showing how to import NimbleGen DNA Methylation array data files in GFF format into Subio Platform, and example analysis work flow.
For more information a...
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Import NimbleGen CGH 1.4M
subiosupport
85 views
A tutorial movie showing how to import NimbleGen CGH 1.4M data files in GFF format into Subio Platform, and example analysis work flow.
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Comparing MAS5 and RMA, 2 ways of quantification for GeneChip
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88 views
There are several ways of gene-level-quantification for Affymetrix 3'-IVT GeneChip data. MAS5 is the oldest algorithm, and RMA is one of lately developed ones.
Some peop...
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Quality of PolyA-seq data, comparing with Affymetrix GeneChip.mp4
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112 views
RNA-seq on Illumina GA system might be problematic, and this PolyA-seq approach seems to be better. As authors mentioned, it is likely to be more sensitive than Affymetrix ...
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Analyze ChIP-chip data (Affy BAR format) 2
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60 views
Following the "Import ChIP-chip data" tutorial, this movie shows how to analyze ChIP patterns with motif sequences of TF binding sites.
[related movies]
Import ChIP-c...
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Quality of RNA-seq Data.mp4
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295 views
Is RNA-seq data really "digital"? Is it more sensitive or reliable than microarrays?
Before you go, I recommend you assess technological bias, limitation and cost-performa...
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How to Import RNA-seq (Illumina GA, BAM format) .mp4
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329 views
Subio Platform v1.12 accepts BAM/SAM format files. This tutorial shows how to import BAM files and how to visualize RNA-seq data with Subio Platform.
Data Source: GSE29155...
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How to Analyze RNA-seq (SOLiD, BED format) (demo analysis flow)
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161 views
Following the "How to Import RNA-seq (SOLiD, BED) data" movie tutorial, this shows how to visualize and analyze the data.
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How to Import RNA-seq data (SOLiD, BED format).mp4
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113 views
In RNA-seq studies, bed files are output after mapping reads. Subio Platform accept bed files for visualization and comparison among samples.
Data source: GSE 27443
RNA...
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