leninwtigger web of tutorials
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Molecular dynamics of a protein with cysteine coordinated Zn.
leninwtigger
3,801 views
Molecular dynamics simulation of a protein/zinc complex. This was performed with the AMBER forcefield using the GROMACS suite. Amber allows for the use of deprotonated cyst...
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Alfonso Mind Tricks
leninwtigger
28 views
Alfonso using the Force to control me...
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MOV09091
leninwtigger
138 views
Aggie marching band-uh! @ San Francisco 02-08-2009
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My 2008 in 65 images
leninwtigger
34 views
My 2008 in 65 still pictures. Just what my camera manage to snag from everything that happen this year.
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NAcGluP docked into a model of NagC with autodock 4.
leninwtigger
1,086 views
NAcGluP docked into a model of NagC using autodock4. This results have been published as the following reference:
Pennetier C, DomÃnguez-RamÃrez L, Plumbridge J.
Diffe...
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Hevein MD @ 310 K in explicit solvent
leninwtigger
355 views
Hevein (Hev b 6.02) is a major IgE-binding allergen in natural rubber latex and manufactured products.
Although not shown here this protein has two cystine bonds. Here you...
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MD simulation of Glucosamine Desaminase
leninwtigger
525 views
Simulation of the 1FRZ structure, including the allosteric ligand, showing the water molecules that remain close to their initial postions along the simulation.
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MD simulation of glucosamine-6-phosphate deaminase part III
leninwtigger
617 views
A 10 ns molecular dynamics simulation of glucosamine-6-phosphate deaminase. A close-up of the allosteric ligand an the waters molecules that are near to it. Due to limitati...
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MD simulation of glucosamine-6-phosphate deaminase part II
leninwtigger
399 views
A 10 ns molecular dynamics simulation of glucosamine-6-phosphate deaminase. A close-up of the allosteric ligand an the residues that are near to it. Due to limitations of V...
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MD simulation of glucosamine-6-phosphate deaminase part I
leninwtigger
528 views
A 10 ns molecular dynamics simulation of glucosamine-6-phosphate deaminase. The interesting thing here was to add the allosteric ligand to the simulation. In this movie you...
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About leninwtigger web of tutorials
This is space for video tutorials for different uses and protocols of several tools for science. The main focus is protein structure, docking and molecular simulation
Everything I upload will be made on a Mac. Most of the software shown will be running on the unix side of Mac OS X. So everything should be very similar to what you'll see on Mac OS X, Linux, and Cywin.
Any comments and suggestions are welcome.
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This is space for video tutorials for different uses and protocols of several tools for science. The main focus is protein structure, docking and molecular simulation
Everything I upload will be made on a Mac. Most of the software shown will be r...
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