I don't know if this is naive, but I am wondering if it is possible to generate putative pdbs based only on 1* structure (fasta). Are there programs for this? I am theorizing the binding of two molecules takes place at certain bases on each of them, but the 2 are not solved yet.
Could you add some info on where to get those PDB files from?
And what about the conformation changes of the proteins? The PDB files describe them too? I mean, how can I know where are the "joints" of the molecule it can roteate around and what are the constraints for its movement?
thnks
deshpandedhruva 2 weeks ago
I don't know if this is naive, but I am wondering if it is possible to generate putative pdbs based only on 1* structure (fasta). Are there programs for this? I am theorizing the binding of two molecules takes place at certain bases on each of them, but the 2 are not solved yet.
dgyllen 2 months ago
Great explanation! :)
Could you add some info on where to get those PDB files from?
And what about the conformation changes of the proteins? The PDB files describe them too? I mean, how can I know where are the "joints" of the molecule it can roteate around and what are the constraints for its movement?
Saskachewan 1 year ago
Comment removed
tommycarstensen 3 months ago
@Saskachewan You can download PDB files from here: wwpdb.org, pdb.org, pdbe.org, pdbj.org
If you want to know about "joints" of a molecule you can try to search for dyndom.
tommycarstensen 3 months ago